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Here's a blog article in progress, written by Eugene Lerman:
More network theory, this time about dynamical systems! This aspect of network theory will be really important when dealing with box models and other models of dynamical systems made of interacting parts.
I've inserted some questions and comments, always followed by ???, to make them easy to find.
Comments and questions will be helpful, though I don't expect most people will ever find this one easy to read, so I'm not aiming for that.