* Darren J. Wilkinson, _Stochastic Modelling for Systems Biology_, Taylor & Francis, New York, 2006. Good introduction to stochastic Petri nets, with applications to gene expression and the [[Lotka-Volterra equations]] for predator-prey interactions.
Chapter on case studies has the following applications, with simulation lab exercises:
* Dimerization kinetics
* Michaelis-Menten enzyme kinetics
* An auto-regulatory genetic network
* The lac operon
In this thread we'll look into the one on dimerization kinetics.